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stim1.L stromal interaction molecule 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779419, updated on 3-Jul-2024

Summary

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Official Symbol
stim1.L
Official Full Name
stromal interaction molecule 1 L homeolog
Primary source
Xenbase:XB-GENE-947977
Locus tag
XELAEV_18013962mg
See related
EnsemblRapid:ENSXLAG00005031558
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
stim1; stim1.S
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Genomic context

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See stim1.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (180739125..180800272, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (173061488..173124947, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like L homeolog Neighboring gene solute carrier family 6 member 7 like L homeolog Neighboring gene ras homolog family member G L homeolog Neighboring gene post-GPI attachment to proteins 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A critical role for STIM1 in filopodial calcium entry and axon guidance. Shim S, et al. Mol Brain, 2013 Dec 1. PMID 24289807, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC154748

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium channel regulator activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within calcium ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
stromal interaction molecule 1 L homeolog
Names
stromal interaction molecule 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097037.1 → NP_001090506.1  stromal interaction molecule 1 L homeolog precursor

    See identical proteins and their annotated locations for NP_001090506.1

    Status: PROVISIONAL

    Source sequence(s)
    BC126011
    UniProtKB/TrEMBL
    A0A974DMM2, A0JMU6
    Conserved Domains (4) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    smart00454
    Location:118 → 156
    SAM; Sterile alpha motif
    pfam06156
    Location:228 → 298
    DUF972; Protein of unknown function (DUF972)
    pfam16533
    Location:333 → 430
    SOAR; STIM1 Orai1-activating region

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    180739125..180800272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581137.1 → XP_041437071.1  stromal interaction molecule 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M6X5, A0A974DMM2
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_041581148.1 → XP_041437082.1  stromal interaction molecule 1 L homeolog isoform X11

    UniProtKB/TrEMBL
    A0A8J1M5W4
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_041581147.1 → XP_041437081.1  stromal interaction molecule 1 L homeolog isoform X10

    UniProtKB/TrEMBL
    A0A8J1M6Y5
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_041581142.1 → XP_041437076.1  stromal interaction molecule 1 L homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J1M6Y0, A0A974I032
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_041581140.1 → XP_041437074.1  stromal interaction molecule 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1M5V8, A0A974I032
    Related
    ENSXLAP00005094806.1, ENSXLAT00005096510.1
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_041581141.1 → XP_041437075.1  stromal interaction molecule 1 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1M7P9, A0A974I032
    Related
    ENSXLAP00005094546.1, ENSXLAT00005096248.1
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_041581139.1 → XP_041437073.1  stromal interaction molecule 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1M5X1, A0A974I032
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_041581144.1 → XP_041437078.1  stromal interaction molecule 1 L homeolog isoform X7

    UniProtKB/TrEMBL
    A0A8J1M5X6, A0A974DMM2
    Related
    ENSXLAP00005094605.1, ENSXLAT00005096307.1
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  9. XM_041581145.1 → XP_041437079.1  stromal interaction molecule 1 L homeolog isoform X8

    UniProtKB/TrEMBL
    A0A8J1M5W2, A0A974DMM2
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  10. XM_041581143.1 → XP_041437077.1  stromal interaction molecule 1 L homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J1M5V7, A0A974DMM2
    Related
    ENSXLAP00005094867.1, ENSXLAT00005096577.1
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  11. XM_041581149.1 → XP_041437083.1  stromal interaction molecule 1 L homeolog isoform X12

    UniProtKB/TrEMBL
    A0A8J1M5Y1
    Conserved Domains (3) summary
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl15755
    Location:117 → 190
    SAM_superfamily; SAM (Sterile alpha motif )

  12. XM_041581146.1 → XP_041437080.1  stromal interaction molecule 1 L homeolog isoform X9

    UniProtKB/TrEMBL
    A0A8J1M7Q4
    Conserved Domains (3) summary
    cd09573
    Location:117 → 190
    SAM_STIM1; SAM domain of STIM1 subfamily proteins
    cd11722
    Location:336 → 427
    SOAR; STIM1 Orai1-activating region
    COG1196
    Location:226 → 423
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein Strain
Heading Accession and Version

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