sdr42e1.L short chain dehydrogenase/reductase family 42E, member 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: sdr42e1.L
Official Full Name: short chain dehydrogenase/reductase family 42E, member 1 L homeolog
Primary source: Xenbase:XB-GENE-985968
Locus tag: XELAEV_18022664mg
See related: EnsemblRapid:ENSXLAG00005033309 AllianceGenome:Xenbase:XB-GENE-985968
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: sdr42e1
Summary: Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in membrane. Orthologous to human SDR42E1 (short chain dehydrogenase/reductase family 42E, member 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4L

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4L	NC_054377.1 (58085827..58091278)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4L	NC_030730.1 (52873499..52878950)

Chromosome 4L - NC_054377.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within steroid biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: short-chain dehydrogenase/reductase family 42E member 1

Names: 3-beta-HSD family protein HSPC105 homolog

NP_001090495.1

EC 1.1.1.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001097026.1 → NP_001090495.1 short-chain dehydrogenase/reductase family 42E member 1

See identical proteins and their annotated locations for NP_001090495.1

Status: PROVISIONAL

Source sequence(s)

BC123279

UniProtKB/Swiss-Prot

Q0IH73

UniProtKB/TrEMBL

A0A974HNX6

Related

ENSXLAP00005099524.1, ENSXLAT00005101430.1

Conserved Domains (2) summary

cd09812
Location:10 → 347

3b-HSD_like_1_SDR_e; 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs

pfam01073
Location:12 → 280

3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family