rbm5.L RNA binding motif protein 5 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rbm5.L
Official Full Name: RNA binding motif protein 5 L homeolog
Primary source: Xenbase:XB-GENE-494991
Locus tag: XELAEV_18023821mg
See related: EnsemblRapid:ENSXLAG00005033134
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: g15; h37; rbm5; rmb5; luca15; rbm5-a; rbm5-b
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Genomic context

Location:: chromosome: 4L

Exon count:: 24

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4L	NC_054377.1 (125097506..125116320, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4L	NC_030730.1 (119838398..119857203, complement)

Chromosome 4L - NC_054377.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	ISS Inferred from Sequence or Structural Similarity more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA splicing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of apoptotic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within spliceosomal complex assembly	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info
part_of spliceosomal complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RNA-binding protein 5-A

Names: RNA-binding motif protein 5-A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096965.1 → NP_001090434.1 RNA-binding protein 5-A

See identical proteins and their annotated locations for NP_001090434.1

Status: PROVISIONAL

Source sequence(s)

BC126019

UniProtKB/Swiss-Prot

A0JMV4

UniProtKB/TrEMBL

A0A974D7Q0

Related

ENSXLAP00005099116.1, ENSXLAT00005100982.1

Conserved Domains (6) summary

cd12752
Location:97 → 183

RRM1_RBM5; RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5)

cd12755
Location:239 → 324

RRM2_RBM5; RNA recognition motif 2 in vertebrate RNA-binding protein 5 (RBM5)

sd00025
Location:189 → 208

zf-RanBP2; RanBP2-type Zn finger [structural motif]

pfam00641
Location:185 → 212

zf-RanBP; Zn-finger in Ran binding protein and others

pfam01585
Location:762 → 805

G-patch; G-patch domain

cd16168
Location:470 → 525

OCRE_RBM5; OCRE domain found in RNA-binding protein 5 (RBM5) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

125097506..125116320 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)