tatdn3.L TatD DNase domain containing 3 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tatdn3.L
Official Full Name: TatD DNase domain containing 3 L homeolog
Primary source: Xenbase:XB-GENE-5839537
Locus tag: XELAEV_18026211mg
See related: EnsemblRapid:ENSXLAG00005027592 AllianceGenome:Xenbase:XB-GENE-5839537
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: tatdn3; tatdn3-a
Summary: Predicted to enable metal ion binding activity and nuclease activity. Predicted to be located in nucleus. Orthologous to human TATDN3 (TatD DNase domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 5L

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5L	NC_054379.1 (11915357..11929375)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5L	NC_030732.1 (11197226..11211263)

Chromosome 5L - NC_054379.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables hydrolase activity, acting on ester bonds	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nuclease activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: putative deoxyribonuclease tatdn3-A

NP_001090394.1

EC 3.1.21.-

XP_041418281.1

EC 3.1.21.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096925.1 → NP_001090394.1 putative deoxyribonuclease tatdn3-A

See identical proteins and their annotated locations for NP_001090394.1

Status: PROVISIONAL

Source sequence(s)

BC123334

UniProtKB/Swiss-Prot

Q05AV0

UniProtKB/TrEMBL

A0A974HIU4

Related

ENSXLAP00005082189.1, ENSXLAT00005083811.1

Conserved Domains (1) summary

pfam01026
Location:6 → 261

TatD_DNase; TatD related DNase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

11915357..11929375

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041562347.1 → XP_041418281.1 putative deoxyribonuclease tatdn3-A isoform X1

UniProtKB/TrEMBL

A0A8J1KLT6, A0A974HIU4

Related

ENSXLAP00005082138.1, ENSXLAT00005083756.1

Conserved Domains (1) summary

cd01310
Location:15 → 260

TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.