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arl9.L ARF like GTPase 9 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779299, updated on 4-Nov-2024

Summary

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Official Symbol
arl9.L
Official Full Name
ARF like GTPase 9 L homeolog
Primary source
Xenbase:XB-GENE-6252775
Locus tag
XELAEV_18006592mg
See related
EnsemblRapid:ENSXLAG00005034453 AllianceGenome:Xenbase:XB-GENE-6252775
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
arl9
Summary
Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within midbrain development and neural precursor cell proliferation. Predicted to be located in membrane. Orthologous to human ARL9 (ADP ribosylation factor like GTPase 9). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See arl9.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (121991022..122001648)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (109725565..109736193)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene myosin IXB L homeolog Neighboring gene tetraspanin-33 Neighboring gene HOP homeobox L homeolog Neighboring gene uncharacterized LOC108713412 Neighboring gene serine peptidase inhibitor Kazal type 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An in vivo screen to identify candidate neurogenic genes in the developing Xenopus visual system. Bestman JE, et al. Dev Biol, 2015 Dec 15. PMID 25818835, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC154697

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within midbrain development IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within neural precursor cell proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ADP ribosylation factor like GTPase 9 L homeolog; ARF like GTPase 9 L homeolog
Names
ADP-ribosylation factor-like 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096919.1 → NP_001090388.1  ARF like GTPase 9 L homeolog

    See identical proteins and their annotated locations for NP_001090388.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123319
    UniProtKB/TrEMBL
    A0A974DZ48, Q05AV2
    Related
    ENSXLAP00005102951.1, ENSXLAT00005104955.1
    Conserved Domains (2) summary
    cd04162
    Location:86 → 251
    Arl9_Arfrp2_like; Arf-like 9 (Arl9)/Arfrp2-like GTPase
    COG1100
    Location:82 → 199
    Gem1; GTPase SAR1 family domain [General function prediction only]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    121991022..122001648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583226.1 → XP_041439160.1  ADP ribosylation factor like GTPase 9 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MDK2
    Conserved Domains (1) summary
    cd04162
    Location:16 → 181
    Arl9_Arfrp2_like; Arf-like 9 (Arl9)/Arfrp2-like GTPase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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