U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

phf23l.L PHD finger protein 23 like L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779269, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
phf23l.L
Official Full Name
PHD finger protein 23 like L homeolog
Primary source
Xenbase:XB-GENE-6252782
Locus tag
XELAEV_180196642mg
See related
EnsemblRapid:ENSXLAG00005010574 AllianceGenome:Xenbase:XB-GENE-6252782
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
phf23; phf23-a; phf23-b; phf23.S
Summary
Predicted to enable metal ion binding activity. Predicted to act upstream of or within autophagy; negative regulation of macroautophagy; and positive regulation of protein ubiquitination. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See phf23l.L in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (131609790..131616860)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (143884882..143929459, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 5G3 Neighboring gene dishevelled segment polarity protein 2 S homeolog Neighboring gene gamma-aminobutyric acid receptor-associated protein Neighboring gene CTD nuclear envelope phosphatase 1 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC154477

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within autophagy IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of autophagosome assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
PHD finger protein 23B
Names
PHD finger protein 23 S homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096889.1 → NP_001090358.1  PHD finger protein 23B

    See identical proteins and their annotated locations for NP_001090358.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123233
    UniProtKB/Swiss-Prot
    Q0IHB0
    UniProtKB/TrEMBL
    A0A974DFJ6
    Conserved Domains (1) summary
    cd15631
    Location:211 → 254
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    131609790..131616860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587736.1 → XP_041443670.1  PHD finger protein 23B isoform X1

    UniProtKB/TrEMBL
    A0A8J1MRL5, A0A974DFJ6
    Related
    ENSXLAP00005031192.1, ENSXLAT00005031957.1
    Conserved Domains (1) summary
    cd15631
    Location:195 → 238
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0IHB0.1 GenPept UniProtKB/Swiss-Prot:Q0IHB0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.