rilpl1.L Rab interacting lysosomal protein-like 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rilpl1.L
Official Full Name: Rab interacting lysosomal protein-like 1 L homeolog
Primary source: Xenbase:XB-GENE-17338188
Locus tag: XELAEV_18007779mg
See related: EnsemblRapid:ENSXLAG00005034438
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rilpl1
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 1L

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	1L	NC_054371.1 (174805783..174832431)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	1L	NC_030724.1 (161654025..161676750)

Chromosome 1L - NC_054371.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables dynein light intermediate chain binding	IEA Inferred from Electronic Annotation more info
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info
enables small GTPase binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cilium assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within epithelial cell morphogenesis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within nitric oxide mediated signal transduction	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein transport from ciliary membrane to plasma membrane	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in centrosome	IEA Inferred from Electronic Annotation more info
located_in centrosome	ISS Inferred from Sequence or Structural Similarity more info
located_in ciliary basal body	IEA Inferred from Electronic Annotation more info
located_in cilium	IEA Inferred from Electronic Annotation more info
located_in cilium	ISS Inferred from Sequence or Structural Similarity more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in cytosol	ISS Inferred from Sequence or Structural Similarity more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: RILP-like protein 1

Names: rab-interacting lysosomal-like protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096866.1 → NP_001090335.1 RILP-like protein 1

See identical proteins and their annotated locations for NP_001090335.1

Status: PROVISIONAL

Source sequence(s)

BC123187

UniProtKB/Swiss-Prot

Q0IHE5

UniProtKB/TrEMBL

A0A974E2J7, A0A974E3P9

Related

ENSXLAP00005102890.1, ENSXLAT00005104893.1

Conserved Domains (2) summary

pfam09744
Location:20 → 166

Jnk-SapK_ap_N; JNK_SAPK-associated protein-1

pfam11461
Location:287 → 335

RILP; Rab interacting lysosomal protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

174805783..174832431

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041583205.1 → XP_041439139.1 RILP-like protein 1 isoform X2

UniProtKB/TrEMBL

A0A8J1MBQ9, A0A974E3P9

Related

ENSXLAP00005102968.1, ENSXLAT00005104972.1

Conserved Domains (2) summary

COG1196
Location:85 → 358

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

cd14445
Location:2 → 69

RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
XM_018250897.2 → XP_018106386.1 RILP-like protein 1 isoform X1

UniProtKB/TrEMBL

A0A8J0UFH8, A0A974E3P9
XM_018250901.2 → XP_018106390.1 RILP-like protein 1 isoform X3

UniProtKB/TrEMBL

A0A8J0UNG7, A0A974E3P9

Related

ENSXLAP00005103004.1, ENSXLAT00005105009.1