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rapgef5.S Rap guanine nucleotide exchange factor 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779207, updated on 4-Nov-2024

Summary

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Official Symbol
rapgef5.S
Official Full Name
Rap guanine nucleotide exchange factor 5 S homeolog
Primary source
Xenbase:XB-GENE-6252805
Locus tag
XELAEV_18033044mg
See related
EnsemblRapid:ENSXLAG00005003725 AllianceGenome:Xenbase:XB-GENE-6252805
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rapgef5
Summary
Predicted to act upstream of or within intracellular signal transduction. Orthologous to human RAPGEF5 (Rap guanine nucleotide exchange factor 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rapgef5.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (32340961..32376753, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (31818817..31854989, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121393097 Neighboring gene uncharacterized LOC121395018 Neighboring gene cell division cycle associated 7 like S homeolog Neighboring gene uncharacterized LOC108717852 Neighboring gene interleukin 6 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC154311

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Rap guanine nucleotide exchange factor 5 S homeolog
Names
Rap guanine nucleotide exchange factor (GEF) 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096829.1 → NP_001090298.1  Rap guanine nucleotide exchange factor 5 S homeolog

    See identical proteins and their annotated locations for NP_001090298.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123126
    UniProtKB/TrEMBL
    A0A974CJL0, Q0IHJ8
    Related
    ENSXLAP00005011091.1, ENSXLAT00005011265.1
    Conserved Domains (1) summary
    cd04437
    Location:116 → 239
    DEP_Epac; DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    32340961..32376753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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