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nsun6.L NOP2/Sun RNA methyltransferase 6 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779206, updated on 17-Aug-2024

Summary

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Official Symbol
nsun6.L
Official Full Name
NOP2/Sun RNA methyltransferase 6 L homeolog
Primary source
Xenbase:XB-GENE-947962
Locus tag
XELAEV_18030807mg
See related
EnsemblRapid:ENSXLAG00005029175
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nsun6
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Genomic context

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See nsun6.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (27644911..27666545)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (25161099..25182372)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene MAM and LDL receptor class A domain containing 1 L homeolog Neighboring gene ADP ribosylation factor like GTPase 5B L homeolog Neighboring gene calcium channel, voltage-dependent, beta 2 subunit L homeolog Neighboring gene macrophage mannose receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC154309

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NOP2/Sun RNA methyltransferase 6 L homeolog
Names
NOP2/Sun RNA methyltransferase family member 6 L homeolog
NOP2/Sun domain family, member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096828.1 → NP_001090297.1  NOP2/Sun RNA methyltransferase 6 L homeolog

    See identical proteins and their annotated locations for NP_001090297.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123125
    UniProtKB/TrEMBL
    A0A974CLH0, Q0IHJ9
    Related
    ENSXLAP00005086977.1, ENSXLAT00005088637.1
    Conserved Domains (2) summary
    smart00359
    Location:113 → 202
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:193 → 467
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    27644911..27666545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565588.1 → XP_041421522.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KW45, A0A974CLH0
    Conserved Domains (2) summary
    smart00359
    Location:113 → 202
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:193 → 467
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  2. XM_041565591.1 → XP_041421525.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KW45, A0A974CLH0
    Conserved Domains (2) summary
    smart00359
    Location:113 → 202
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:193 → 467
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  3. XM_041565587.1 → XP_041421521.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KW45, A0A974CLH0
    Conserved Domains (2) summary
    smart00359
    Location:113 → 202
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:193 → 467
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  4. XM_041565595.1 → XP_041421529.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1KZ44
    Conserved Domains (1) summary
    PRK14902
    Location:24 → 377
    PRK14902; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB

  5. XM_041565593.1 → XP_041421527.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1KXR8, A0A974CLH0
    Conserved Domains (2) summary
    smart00359
    Location:61 → 150
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:141 → 415
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  6. XM_041565590.1 → XP_041421524.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KW45, A0A974CLH0
    Conserved Domains (2) summary
    smart00359
    Location:113 → 202
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:193 → 467
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  7. XM_041565594.1 → XP_041421528.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1KXR8, A0A974CLH0
    Conserved Domains (2) summary
    smart00359
    Location:61 → 150
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:141 → 415
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  8. XM_041565589.1 → XP_041421523.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KW45, A0A974CLH0
    Conserved Domains (2) summary
    smart00359
    Location:113 → 202
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:193 → 467
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  9. XM_041565592.1 → XP_041421526.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KW45, A0A974CLH0
    Conserved Domains (2) summary
    smart00359
    Location:113 → 202
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:193 → 467
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

  10. XM_041565596.1 → XP_041421530.1  NOP2/Sun RNA methyltransferase 6 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1KW48
    Conserved Domains (1) summary
    COG0144
    Location:52 → 326
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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