U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

smg1.L SMG1 phosphatidylinositol 3-kinase-related kinase L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779188, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
smg1.L
Official Full Name
SMG1 phosphatidylinositol 3-kinase-related kinase L homeolog
Primary source
Xenbase:XB-GENE-6252967
Locus tag
XELAEV_18045208mg
See related
AllianceGenome:Xenbase:XB-GENE-6252967
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
smg1
Summary
Orthologous to human SMG1 (SMG1 nonsense mediated mRNA decay associated PI3K related kinase). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See smg1.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (103582015..103589423)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (93018414..93025949)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin 17 L homeolog Neighboring gene C-type lectin domain family 19 member A L homeolog Neighboring gene uncharacterized LOC108701546 Neighboring gene transmembrane channel like 7 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC98890

General protein information

Go to the top of the page Help
Preferred Names
SMG1 phosphatidylinositol 3-kinase-related kinase L homeolog
Names
SMG1 homolog, phosphatidylinositol 3-kinase-related kinase
smg-1 homolog, phosphatidylinositol 3-kinase-related kinase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096811.1 → NP_001090280.1  SMG1 phosphatidylinositol 3-kinase-related kinase L homeolog

    See identical proteins and their annotated locations for NP_001090280.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098320
    UniProtKB/TrEMBL
    Q4KMW3
    Conserved Domains (1) summary
    pfam02260
    Location:250 → 279
    FATC; FATC domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    103582015..103589423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.