U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

atf1.S activating transcription factor 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779184, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
atf1.S
Official Full Name
activating transcription factor 1 S homeolog
Primary source
Xenbase:XB-GENE-17338695
Locus tag
XELAEV_18015982mg
See related
EnsemblRapid:ENSXLAG00005025482
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See atf1.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (134833273..134851375, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (125823785..125843857, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene sodium channel, voltage gated, type VIII alpha subunit S homeolog Neighboring gene uncharacterized LOC496010 Neighboring gene disco interacting protein 2 homolog B S homeolog Neighboring gene La ribonucleoprotein domain family member 4 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC85066

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
activating transcription factor 1 S homeolog; cyclic AMP-dependent transcription factor ATF-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    134833273..134851375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041584454.1 → XP_041440388.1  cyclic AMP-dependent transcription factor ATF-1

    UniProtKB/TrEMBL
    A0A974HWN7, Q58E78
    Conserved Domains (2) summary
    cd14690
    Location:223 → 277
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:54 → 94
    pKID; pKID domain

  2. XM_041584455.1 → XP_041440389.1  cyclic AMP-dependent transcription factor ATF-1

    UniProtKB/TrEMBL
    A0A974HWN7, Q58E78
    Related
    ENSXLAP00005075774.1, ENSXLAT00005077354.1
    Conserved Domains (2) summary
    cd14690
    Location:223 → 277
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:54 → 94
    pKID; pKID domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001096807.1: Suppressed sequence

    Description
    NM_001096807.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials