zmynd10.L zinc finger MYND-type containing 10 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: zmynd10.L
Official Full Name: zinc finger MYND-type containing 10 L homeolog
Primary source: Xenbase:XB-GENE-961073
Locus tag: XELAEV_18023843mg
See related: EnsemblRapid:ENSXLAG00005030492 AllianceGenome:Xenbase:XB-GENE-961073
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: zmynd10
Summary: Predicted to enable metal ion binding activity. Predicted to act upstream of or within cilium assembly and positive regulation of motile cilium assembly. Located in dynein axonemal particle. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 22. Orthologous to human ZMYND10 (zinc finger MYND-type containing 10). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4L

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4L	NC_054377.1 (126163732..126186817, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4L	NC_030730.1 (120909534..120932550, complement)

Chromosome 4L - NC_054377.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within inner dynein arm assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within inner dynein arm assembly	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within motile cilium assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within motile cilium assembly	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within outer dynein arm assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within outer dynein arm assembly	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within positive regulation of motile cilium assembly	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in apical plasma membrane	IEA Inferred from Electronic Annotation more info
located_in apical plasma membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in centriolar satellite	IEA Inferred from Electronic Annotation more info
located_in centriolar satellite	ISS Inferred from Sequence or Structural Similarity more info
located_in cilium	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in dynein axonemal particle	IDA Inferred from Direct Assay more info	PubMed
located_in dynein axonemal particle	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger MYND domain-containing protein 10

Names: zinc finger, MYND domain-containing 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096803.1 → NP_001090272.2 zinc finger MYND domain-containing protein 10

Status: PROVISIONAL

Source sequence(s)

BC089198

UniProtKB/Swiss-Prot

Q5FWU8

Related

ENSXLAP00005091461.1, ENSXLAT00005093141.1

Conserved Domains (1) summary

pfam01753
Location:401 → 437

zf-MYND; MYND finger

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

126163732..126186817 complement

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GenBank, FASTA, Sequence Viewer (Graphics)