U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

slc12a9.L solute carrier family 12, member 9 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779157, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
slc12a9.L
Official Full Name
solute carrier family 12, member 9 L homeolog
Primary source
Xenbase:XB-GENE-5943252
Locus tag
XELAEV_18019559mg
See related
EnsemblRapid:ENSXLAG00005023592 AllianceGenome:Xenbase:XB-GENE-5943252
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cip1; slc12a9
Summary
Predicted to enable potassium:chloride symporter activity. Predicted to act upstream of or within several processes, including chloride ion homeostasis; chloride transmembrane transport; and potassium ion homeostasis. Predicted to be located in plasma membrane. Orthologous to human SLC12A9 (solute carrier family 12 member 9). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See slc12a9.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (159343130..159359262, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (142290073..142303732, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene cornifelin homolog Neighboring gene uncharacterized LOC121401675 Neighboring gene acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase Neighboring gene uncharacterized LOC121401676 Neighboring gene erythropoietin L homeolog Neighboring gene uncharacterized LOC108711831

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Cloning and functional characterization of a cation-Cl- cotransporter-interacting protein. Caron L, et al. J Biol Chem, 2000 Oct 13. PMID 10871601
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC86375

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables chloride:monoatomic cation symporter activity IEA
Inferred from Electronic Annotation
more info
  
enables potassium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell volume homeostasis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chloride ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within potassium ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
solute carrier family 12 member 9
Names
cation-chloride cotransporter-interacting protein 1
solute carrier family 12 (potassium/chloride transporters), member 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096782.1 → NP_001090251.1  solute carrier family 12 member 9

    See identical proteins and their annotated locations for NP_001090251.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080420
    UniProtKB/Swiss-Prot
    Q0VGW6
    UniProtKB/TrEMBL
    A0A974DI28
    Related
    ENSXLAP00005069863.1, ENSXLAT00005071399.1
    Conserved Domains (2) summary
    TIGR00930
    Location:44 → 890
    2a30; K-Cl cotransporter
    pfam03522
    Location:550 → 801
    SLC12; Solute carrier family 12

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    159343130..159359262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041585287.1 → XP_041441221.1  solute carrier family 12 member 9 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MIL6
    Related
    ENSXLAP00005069823.1, ENSXLAT00005071358.1
    Conserved Domains (1) summary
    TIGR00930
    Location:50 → 896
    2a30; K-Cl cotransporter
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0VGW6.1 GenPept UniProtKB/Swiss-Prot:Q0VGW6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials