snail transcription factor protein [Ciona intestinalis (vase tunicate)] - Gene

Summary

Gene symbol: snail
Gene description: transcription factor protein
See related: Ensembl:ENSCING00000008903
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Ciona intestinalis
Lineage: Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as: Zfp27; Ci-snail
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 3

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
104	current	KH (GCF_000224145.3)	3	NC_020168.2 (5679284..5682504)

Chromosome 3 - NC_020168.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_020168.2 Chromosome 3 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

This study indicates that the Snail transcription factor mediates one of the first fate subdivisions that take place across the medial-lateral axis of the neural plate in Ciona intestinalis.
Title: Snail mediates medial-lateral patterning of the ascidian neural plate.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: transcription factor protein

Names: snail homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001078353.1 → NP_001071821.1 transcription factor protein

See identical proteins and their annotated locations for NP_001071821.1

Status: PREDICTED

Source sequence(s)

AB210695

UniProtKB/TrEMBL

A0A1W2VRZ5, F6QBI4, Q4H2S7

Related

ENSCINP00000018113, ENSCINT00000018113

Conserved Domains (3) summary

sd00017
Location:495 → 515

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:521 → 543

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:508 → 531

zf-H2C2_2; Zinc-finger double domain