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LOC778626 Fringe [ Ciona intestinalis (vase tunicate) ]

Gene ID: 778626, updated on 21-Dec-2023

Summary

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Gene symbol
LOC778626
Gene description
Fringe
See related
Ensembl:ENSCING00000016795
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC778626 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190441.2 (158331..160187)

NW_004190441.2Genomic Context describing neighboring genes Neighboring gene DNA (cytosine-5)-methyltransferase 3A-like Neighboring gene uncharacterized LOC108950356 Neighboring gene protein BUD31 homolog Neighboring gene cartilage-associated protein Neighboring gene activating signal cointegrator 1 complex subunit 1-like Neighboring gene mRNA turnover protein 4 homolog Neighboring gene transglutiminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004190441 Unplaced Scaffold Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
  2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Fringe; fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078252.1 → NP_001071720.1  Fringe precursor

    See identical proteins and their annotated locations for NP_001071720.1

    Status: PROVISIONAL

    Source sequence(s)
    AB210452
    UniProtKB/TrEMBL
    A0A1W2VNT2, Q4H3H0
    Related
    ENSCINP00000028881, ENSCINT00000029127
    Conserved Domains (1) summary
    pfam02434
    Location:57 → 301
    Fringe; Fringe-like

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NW_004190441.2 Reference KH Primary Assembly

    Range
    158331..160187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018815911.2 → XP_018671456.1  fringe isoform X1

    UniProtKB/TrEMBL
    A0A1W3JI75, F6QT95

  2. XM_009863291.3 → XP_009861593.1  fringe isoform X1

    UniProtKB/TrEMBL
    A0A1W3JI75, F6QT95
    Conserved Domains (1) summary
    pfam02434
    Location:57 → 301
    Fringe; Fringe-like
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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