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APX2 cytosolic ascorbate peroxidase 2 [ Solanum lycopersicum (tomato) ]

Gene ID: 778224, updated on 1-Nov-2024

Summary

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Gene symbol
APX2
Gene description
cytosolic ascorbate peroxidase 2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
APX
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Genomic context

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See APX2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 6 NC_090805.1 (188655..191842, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 6 NC_015443.3 (170150..173336, complement)

Chromosome 6 - NC_090805.1Genomic Context describing neighboring genes Neighboring gene dof zinc finger protein DOF2.1-like Neighboring gene pentatricopeptide repeat-containing protein At4g02820, mitochondrial Neighboring gene cytosolic ascorbate peroxidase 1 Neighboring gene mitogen-activated protein kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning, expression and mapping analysis of a novel cytosolic ascorbate peroxidase gene from tomato. Zou LP, et al. DNA Seq, 2005 Dec. PMID 16287625
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to reactive oxygen species IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic ascorbate peroxidase 2
Names
ascorbate peroxidase
NP_001234788.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247859.2 → NP_001234788.2  cytosolic ascorbate peroxidase 2

    Status: VALIDATED

    Source sequence(s)
    AY974805, BW685190
    UniProtKB/TrEMBL
    Q3I5C3, Q52QQ4
    Conserved Domains (1) summary
    cl00196
    Location:1 → 250
    plant_peroxidase_like; Heme-dependent peroxidases similar to plant peroxidases

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090805.1 Reference SLM_r2.1 Primary Assembly

    Range
    188655..191842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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