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Jrkl Jrk-like [ Mus musculus (house mouse) ]

Gene ID: 77532, updated on 2-Nov-2024

Summary

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Official Symbol
Jrklprovided by MGI
Official Full Name
Jrk-likeprovided by MGI
Primary source
MGI:MGI:1924782
See related
Ensembl:ENSMUSG00000079083 AllianceGenome:MGI:1924782
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
HHMJG; C030035D04Rik
Summary
Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human JRKL (JRK like). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See Jrkl in Genome Data Viewer
Location:
9; 9 A1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (13242795..13245746, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (13242790..13245741, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_23325 Neighboring gene STARR-seq mESC enhancer starr_23326 Neighboring gene heat shock protein 1 (chaperonin) pseudogene 15 Neighboring gene STARR-seq mESC enhancer starr_23327 Neighboring gene STARR-seq mESC enhancer starr_23328 Neighboring gene STARR-seq mESC enhancer starr_23329 Neighboring gene STARR-seq mESC enhancer starr_23330 Neighboring gene RIKEN cDNA 4930568E12 gene Neighboring gene STARR-seq mESC enhancer starr_23331 Neighboring gene coiled-coil domain containing 82 Neighboring gene predicted gene, 26189 Neighboring gene mastermind like transcriptional coactivator 2 Neighboring gene per-hexamer repeat gene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
jerky protein homolog-like
Names
jerky homolog-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033181.1 → NP_001028353.1  jerky protein homolog-like

    See identical proteins and their annotated locations for NP_001028353.1

    Status: VALIDATED

    Source sequence(s)
    BB210598, BC138472
    Consensus CDS
    CCDS57650.1
    UniProtKB/Swiss-Prot
    B2RRL2, Q3V2Y6
    Related
    ENSMUSP00000128798.2, ENSMUST00000110582.4
    Conserved Domains (3) summary
    smart00674
    Location:73 → 139
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    pfam03184
    Location:206 → 385
    DDE_1; DDE superfamily endonuclease
    cl21459
    Location:4 → 52
    HTH; Helix-turn-helix domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    13242795..13245746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2RRL2.1 GenPept UniProtKB/Swiss-Prot:B2RRL2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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