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DNAJC17 DnaJ heat shock protein family (Hsp40) member C17 [ Gallus gallus (chicken) ]

Gene ID: 770519, updated on 10-Oct-2024

Summary

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Official Symbol
DNAJC17provided by CGNC
Official Full Name
DnaJ heat shock protein family (Hsp40) member C17provided by CGNC
Primary source
CGNC:16913
See related
Ensembl:ENSGALG00010023205
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See DNAJC17 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (1186331..1208640, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (1181021..1203338, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 1 subfamily C polypeptide 1 Neighboring gene regulator of microtubule dynamics 3 Neighboring gene microRNA 1808 Neighboring gene GTP cyclohydrolase I feedback regulator Neighboring gene C15orf62 homolog Neighboring gene olfactory receptor 1052-like Neighboring gene olfactory receptor, family 8, subfamily U, member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of chicken embryonic gonad expressed sequenced tags. Shin JH, et al. Anim Genet, 2006 Feb. PMID 16441308
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily C member 17
Names
DnaJ (Hsp40) homolog, subfamily C, member 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001267575.1 → NP_001254504.1  dnaJ homolog subfamily C member 17

    Status: VALIDATED

    Source sequence(s)
    BX930005, CV859257
    UniProtKB/TrEMBL
    A0A8V0ZLR9
    Related
    ENSGALP00010034317.1, ENSGALT00010056575.1
    Conserved Domains (3) summary
    PRK00409
    Location:75 → 158
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    pfam00226
    Location:18 → 73
    DnaJ; DnaJ domain
    cd12429
    Location:172 → 248
    RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1186331..1208640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040701136.2 → XP_040557070.1  dnaJ homolog subfamily C member 17 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZLR9
    Conserved Domains (2) summary
    pfam00226
    Location:18 → 73
    DnaJ; DnaJ domain
    cd12429
    Location:175 → 251
    RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

  2. XM_040701137.2 → XP_040557071.1  dnaJ homolog subfamily C member 17 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZLR9
    Conserved Domains (3) summary
    PRK00409
    Location:75 → 158
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    pfam00226
    Location:18 → 73
    DnaJ; DnaJ domain
    cd12429
    Location:172 → 248
    RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

  3. XM_025150843.3 → XP_025006611.1  dnaJ homolog subfamily C member 17 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZLR9
    Conserved Domains (3) summary
    pfam00226
    Location:18 → 73
    DnaJ; DnaJ domain
    pfam04111
    Location:66 → 157
    APG6; Autophagy protein Apg6
    cl17169
    Location:172 → 221
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_015286225.4 → XP_015141711.1  dnaJ homolog subfamily C member 17 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZLR9
    Related
    ENSGALP00010034330.1, ENSGALT00010056588.1
    Conserved Domains (2) summary
    pfam00226
    Location:18 → 73
    DnaJ; DnaJ domain
    cd12429
    Location:175 → 251
    RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1181021..1203338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046918904.1 → XP_046774860.1  dnaJ homolog subfamily C member 17 isoform X1

  2. XM_046918905.1 → XP_046774861.1  dnaJ homolog subfamily C member 17 isoform X2

  3. XM_046918906.1 → XP_046774862.1  dnaJ homolog subfamily C member 17 isoform X3

  4. XM_046918903.1 → XP_046774859.1  dnaJ homolog subfamily C member 17 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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