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CHTF8 chromosome transmission fidelity factor 8 [ Gallus gallus (chicken) ]

Gene ID: 769609, updated on 17-Aug-2024

Summary

Symbol
CHTF8provided by CGNC
Full Name
chromosome transmission fidelity factor 8provided by CGNC
Primary source
CGNC:55390
See related
Ensembl:ENSGALG00010008163
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See CHTF8 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (18560310..18561997, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (18908299..18909986, complement)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domains 7 Neighboring gene hyaluronan synthase 3 Neighboring gene UTP4, small subunit processome component Neighboring gene syntrophin beta 2

Genomic regions, transcripts, and products

General protein information

Preferred Names
chromosome transmission fidelity protein 8 homolog
Names
CTF8, chromosome transmission fidelity factor 8 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277638.2NP_001264567.1  chromosome transmission fidelity protein 8 homolog

    See identical proteins and their annotated locations for NP_001264567.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is a protein-coding transcript of this gene. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    JAENSK010000248
    UniProtKB/TrEMBL
    F1NU26
    Related
    ENSGALP00010011028.1, ENSGALT00010019480.1
    Conserved Domains (1) summary
    pfam09696
    Location:19104
    Ctf8; Ctf8
  2. NM_001277645.2NP_001264574.1  chromosome transmission fidelity protein 8 homolog

    See identical proteins and their annotated locations for NP_001264574.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    JAENSK010000248
    UniProtKB/TrEMBL
    F1NU26
    Conserved Domains (1) summary
    pfam09696
    Location:19104
    Ctf8; Ctf8

RNA

  1. NR_102418.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate intron compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    BU255592, CR352955, CR354334
  2. NR_102419.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate first exon and lacks an alternate intron compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    CR354334, CR406334

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    18560310..18561997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040707142.2XP_040563076.1  chromosome transmission fidelity protein 8 homolog isoform X2

    Conserved Domains (1) summary
    pfam09696
    Location:4589
    Ctf8
  2. XM_046899537.1XP_046755493.1  chromosome transmission fidelity protein 8 homolog isoform X2

  3. XM_015292612.4XP_015148098.1  chromosome transmission fidelity protein 8 homolog isoform X1

    UniProtKB/TrEMBL
    F1NU26
    Conserved Domains (1) summary
    pfam09696
    Location:19104
    Ctf8; Ctf8
  4. XM_046899536.1XP_046755492.1  chromosome transmission fidelity protein 8 homolog isoform X2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    18908299..18909986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046925716.1XP_046781672.1  chromosome transmission fidelity protein 8 homolog isoform X2

  2. XM_046925718.1XP_046781674.1  chromosome transmission fidelity protein 8 homolog isoform X2

  3. XM_046925715.1XP_046781671.1  chromosome transmission fidelity protein 8 homolog isoform X1

    UniProtKB/TrEMBL
    F1NU26
  4. XM_046925717.1XP_046781673.1  chromosome transmission fidelity protein 8 homolog isoform X2