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TRA2B transformer 2 beta homolog [ Sus scrofa (pig) ]

Gene ID: 768108, updated on 17-Aug-2024

Summary

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Official Symbol
TRA2Bprovided by VGNC
Official Full Name
transformer 2 beta homologprovided by VGNC
Primary source
VGNC:VGNC:94354
See related
Ensembl:ENSSSCG00000030225
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
SFRS10
Expression
Ubiquitous expression in spleen (RPKM 45.1), ovary (RPKM 37.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TRA2B in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (123760008..123780919, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003539360.1 (29548..37760, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene insulin like growth factor 2 mRNA binding protein 2 Neighboring gene GSK3-beta interaction protein pseudogene Neighboring gene nmrA-like family domain-containing protein 1 Neighboring gene ETS variant transcription factor 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transformer-2 protein homolog beta
Names
splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077221.1 → NP_001070689.1  transformer-2 protein homolog beta

    See identical proteins and their annotated locations for NP_001070689.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ972957
    UniProtKB/TrEMBL
    A0A8D0MI34, A0A8D1IL54, I3LBN9, Q06AA7
    Related
    ENSSSCP00000021460.2, ENSSSCT00000025696.3
    Conserved Domains (1) summary
    cd12363
    Location:117 → 196
    RRM_TRA2; RNA recognition motif (RRM) found in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    123760008..123780919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021068632.1 → XP_020924291.1  transformer-2 protein homolog beta isoform X2

    UniProtKB/TrEMBL
    A0A5G2QFH4, A0A8D0WFH8, A0A8W4F8N1
    Related
    ENSSSCP00000062956.1, ENSSSCT00000070363.1
    Conserved Domains (1) summary
    cd12641
    Location:11 → 97
    RRM_TRA2B; RNA recognition motif (RRM) found in Transformer-2 protein homolog beta (TRA-2 beta) and similar proteins

  2. XM_021068630.1 → XP_020924289.1  transformer-2 protein homolog beta isoform X1

    UniProtKB/TrEMBL
    A0A480VFI8
    Conserved Domains (1) summary
    cd12641
    Location:202 → 290
    RRM_TRA2B; RNA recognition motif in Transformer-2 protein homolog beta (TRA-2 beta) and similar proteins

  3. XM_021068633.1 → XP_020924292.1  transformer-2 protein homolog beta isoform X2

    UniProtKB/TrEMBL
    A0A5G2QFH4, A0A8D0WFH8, A0A8W4F8N1
    Conserved Domains (1) summary
    cd12641
    Location:11 → 97
    RRM_TRA2B; RNA recognition motif (RRM) found in Transformer-2 protein homolog beta (TRA-2 beta) and similar proteins
Nucleotide Protein
Heading Accession and Version

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