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hpxb hemopexin b [ Danio rerio (zebrafish) ]

Gene ID: 767787, updated on 2-Nov-2024

Summary

Official Symbol
hpxbprovided by ZNC
Official Full Name
hemopexin bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-800
See related
AllianceGenome:ZFIN:ZDB-GENE-060929-800
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
hbxb; smarca2; zgc:152945
Summary
Predicted to be located in extracellular region. Orthologous to human HPX (hemopexin). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See hpxb in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (2396041..2414063, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (2885496..2903397, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 Neighboring gene dual specificity phosphatase 29-like Neighboring gene uncharacterized LOC100333749 Neighboring gene uncharacterized LOC110437962

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
hemopexin; uncharacterized protein LOC767787

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    2396041..2414063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173448.5XP_005173505.1  hemopexin

    UniProtKB/TrEMBL
    A0A8M2BKS1
    Conserved Domains (2) summary
    cd00094
    Location:38232
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cl02471
    Location:246433
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001076754.1: Suppressed sequence

    Description
    NM_001076754.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.