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cenatac centrosomal AT-AC splicing factor [ Danio rerio (zebrafish) ]

Gene ID: 767736, updated on 17-Sep-2024

Summary

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Official Symbol
cenatacprovided by ZNC
Official Full Name
centrosomal AT-AC splicing factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-1174
See related
Ensembl:ENSDARG00000059606 AllianceGenome:ZFIN:ZDB-GENE-060929-1174
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ccdc84; zgc:153059
Summary
Orthologous to human CENATAC (centrosomal AT-AC splicing factor). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See cenatac in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (58687541..58696138)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (58017825..58026429)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uroplakin 2 Neighboring gene forkhead box R1 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 12b Neighboring gene TLC domain containing 5b Neighboring gene melanoma cell adhesion molecule a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. foxr1 is a novel maternal-effect gene in fish that is required for early embryonic success. Cheung CT, et al. PeerJ, 2018. PMID 30155373, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC153059

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
centrosomal AT-AC splicing factor
Names
coiled-coil domain containing 84

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327927.1 → NP_001314856.1  centrosomal AT-AC splicing factor

    Status: VALIDATED

    Source sequence(s)
    CT955996, CU571386
    UniProtKB/TrEMBL
    A0A8M1P9K5, F1QIL3
    Related
    ENSDARP00000077450.5, ENSDART00000083015.5
    Conserved Domains (1) summary
    pfam14968
    Location:5 → 322
    CCDC84; Coiled coil protein 84

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    58687541..58696138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009301864.4 → XP_009300139.1  centrosomal AT-AC splicing factor isoform X1

    UniProtKB/TrEMBL
    A0A8M3ASU1
    Conserved Domains (1) summary
    pfam14968
    Location:5 → 321
    CCDC84; Coiled coil protein 84

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001076705.1: Suppressed sequence

    Description
    NM_001076705.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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