U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

afg2b AFG2 AAA ATPase homolog B [ Danio rerio (zebrafish) ]

Gene ID: 767648, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
afg2bprovided by ZNC
Official Full Name
AFG2 AAA ATPase homolog Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-204
See related
Ensembl:ENSDARG00000061763 AllianceGenome:ZFIN:ZDB-GENE-060929-204
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
spata5l1; wu:fi26h05; wu:fi39b02; zgc:153294
Summary
Predicted to enable ATP hydrolysis activity. Orthologous to human SPATA5L1 (spermatogenesis associated 5 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See afg2b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (5530083..5542367, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (5677221..5689505, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene NAD(P) transhydrogenase, mitochondrial Neighboring gene solute carrier family 30 member 4 Neighboring gene zgc:153317 Neighboring gene nicotinamide nucleotide transhydrogenase 2 Neighboring gene cytochrome P450, family 1, subfamily A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A live zebrafish-based screening system for human nuclear receptor ligand and cofactor discovery. Tiefenbach J, et al. PLoS One, 2010 Mar 22. PMID 20339547, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC153294

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ATPase family gene 2 protein homolog B
Names
spermatogenesis associated 5-like 1
NP_001070056.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076588.2 → NP_001070056.2  ATPase family gene 2 protein homolog B

    Status: VALIDATED

    Source sequence(s)
    CU595864, CU929075
    UniProtKB/TrEMBL
    A0A8M1NAX5, F1Q8W3
    Related
    ENSDARP00000107156.2, ENSDART00000129459.3
    Conserved Domains (2) summary
    TIGR01243
    Location:13 → 740
    CDC48; AAA family ATPase, CDC48 subfamily
    pfam00004
    Location:224 → 357
    AAA; ATPase family associated with various cellular activities (AAA)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    5530083..5542367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools