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1700040D17Rik RIKEN cDNA 1700040D17 gene [ Mus musculus (house mouse) ]

Gene ID: 76602, updated on 26-Oct-2024

Summary

Official Symbol
1700040D17Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700040D17 geneprovided by MGI
Primary source
MGI:MGI:1923852
See related
AllianceGenome:MGI:1923852
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 3.5), cerebellum adult (RPKM 1.8) and 9 other tissues See more
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Genomic context

See 1700040D17Rik in Genome Data Viewer
Location:
3 F2.1; 3 40.61 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (94316696..94320262, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (94409389..94412955, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94181128-94181237 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94181285-94181542 Neighboring gene RAR-related orphan receptor gamma Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94186335-94186518 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94191975-94192234 Neighboring gene leucine rich repeat and Ig domain containing 4 Neighboring gene STARR-positive B cell enhancer mm9_chr3:94216846-94217147 Neighboring gene tudor and KH domain containing protein Neighboring gene ornithine decarboxylase antizyme 3 Neighboring gene mitochondrial ribosomal protein L9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152121.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122808, AK006651, AV259906, BF472266

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    94316696..94320262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)