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Fam204a family with sequence similarity 204, member A [ Mus musculus (house mouse) ]

Gene ID: 76539, updated on 2-Nov-2024

Summary

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Official Symbol
Fam204aprovided by MGI
Official Full Name
family with sequence similarity 204, member Aprovided by MGI
Primary source
MGI:MGI:1289174
See related
Ensembl:ENSMUSG00000057858 AllianceGenome:MGI:1289174
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D19Ertd737e; 2310065H12Rik; 2610015K05Rik
Summary
Orthologous to human FAM204A (family with sequence similarity 204 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 6.1), CNS E14 (RPKM 3.6) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Fam204a in Genome Data Viewer
Location:
19 D3; 19 56.52 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (60187018..60215137, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (60197148..60226705, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA E330013P04 gene Neighboring gene STARR-seq mESC enhancer starr_46596 Neighboring gene predicted gene, 41881 Neighboring gene STARR-positive B cell enhancer ABC_E8760 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60302488-60302789 Neighboring gene STARR-positive B cell enhancer ABC_E5714 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60370481-60370782 Neighboring gene STARR-seq mESC enhancer starr_46597 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60386552-60386852 Neighboring gene predicted gene, 41882 Neighboring gene predicted gene, 34300

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein FAM204A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358271.1 → NP_001345200.1  protein FAM204A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK075914, BC048505, BG069480

  2. NM_001358272.1 → NP_001345201.1  protein FAM204A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC102553

  3. NM_001358273.1 → NP_001345202.1  protein FAM204A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC102553
    Consensus CDS
    CCDS29939.1
    UniProtKB/Swiss-Prot
    Q8C6C7
    UniProtKB/TrEMBL
    Q6P7X3
    Related
    ENSMUSP00000158259.2, ENSMUST00000238054.2

  4. NM_029648.7 → NP_083924.2  protein FAM204A isoform 1

    See identical proteins and their annotated locations for NP_083924.2

    Status: VALIDATED

    Source sequence(s)
    AK075914, BC048505, BG069480
    Consensus CDS
    CCDS29939.1
    UniProtKB/Swiss-Prot
    Q8C6C7
    UniProtKB/TrEMBL
    Q6P7X3
    Related
    ENSMUSP00000063913.2, ENSMUST00000065286.2

RNA

  1. NR_152390.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) was represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AC102553

  2. NR_152391.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) was represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AA990572, AK075914, BC048505, BG069480

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    60187018..60215137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527444.4 → XP_006527507.1  protein FAM204A isoform X1

    See identical proteins and their annotated locations for XP_006527507.1

    UniProtKB/Swiss-Prot
    Q8C6C7
    UniProtKB/TrEMBL
    Q6P7X3

  2. XM_006527450.4 → XP_006527513.1  protein FAM204A isoform X2

    See identical proteins and their annotated locations for XP_006527513.1

  3. XM_006527447.4 → XP_006527510.1  protein FAM204A isoform X1

    See identical proteins and their annotated locations for XP_006527510.1

    UniProtKB/Swiss-Prot
    Q8C6C7
    UniProtKB/TrEMBL
    Q6P7X3

  4. XM_017318307.3 → XP_017173796.1  protein FAM204A isoform X2

  5. XM_006527445.4 → XP_006527508.1  protein FAM204A isoform X1

    See identical proteins and their annotated locations for XP_006527508.1

    UniProtKB/Swiss-Prot
    Q8C6C7
    UniProtKB/TrEMBL
    Q6P7X3

  6. XM_006527443.5 → XP_006527506.1  protein FAM204A isoform X1

    See identical proteins and their annotated locations for XP_006527506.1

    UniProtKB/Swiss-Prot
    Q8C6C7
    UniProtKB/TrEMBL
    Q6P7X3

  7. XM_036161723.1 → XP_036017616.1  protein FAM204A isoform X2

  8. XM_030251127.2 → XP_030106987.1  protein FAM204A isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C6C7.1 GenPept UniProtKB/Swiss-Prot:Q8C6C7

Gene LinkOut

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