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MSAmiP MSA micropeptide [ Drosophila melanogaster (fruit fly) ]

Gene ID: 76382456, updated on 11-Sep-2024

Summary

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Official Symbol
MSAmiPprovided by FlyBase
Official Full Name
MSA micropeptideprovided by FlyBase
Primary source
FLYBASE:FBgn0288835
Locus tag
Dmel_CG46527
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG46527; Dmel\CG46527; MSAmiP smORF; MSAmiP20; MSAmiP3; MSAmiP9
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Genomic context

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See MSAmiP in Genome Data Viewer
Location:
89E2-89E3; 3-59 cM
Exon count:
8
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16831115..16896293, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long noncoding RNA: testis-specific 16 Neighboring gene abdominal A Neighboring gene long non-coding RNA:iab8 Neighboring gene long non-coding RNA:iab4 Neighboring gene mir-iab-4 stem loop Neighboring gene mir-iab-8 stem loop Neighboring gene long non-coding RNA:CR43617 Neighboring gene Abdominal B Neighboring gene long non-coding RNA:CR46267 Neighboring gene Vacuolar H[+] ATPase M9.7 subunit d

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_033777.3 Chromosome 3R Reference Release 6 plus ISO1 MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a micropeptide and multiple secondary cell genes that modulate Drosophila male reproductive success. Immarigeon C, et al. Proc Natl Acad Sci U S A, 2021 Apr 13. PMID 33876742, Free PMC Article
  2. The Release 6 reference sequence of the Drosophila melanogaster genome. Hoskins RA, et al. Genome Res, 2015 Mar. PMID 25589440, Free PMC Article
  3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867, Free PMC Article
  4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856, Free PMC Article
  5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in sperm competition IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
MSA micropeptide
Names
CG46527-PA
CG46527-PB
MSAmiP-PA
MSAmiP-PB
msa micropeptide small open reading frame

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    16831115..16896293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001414137.1 → NP_001401044.1  MSA micropeptide, isoform A [Drosophila melanogaster]

    Status: REVIEWED

  2. NM_001414138.1 → NP_001401045.1  MSA micropeptide, isoform B [Drosophila melanogaster]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases