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1700009N14Rik RIKEN cDNA 1700009N14 gene [ Mus musculus (house mouse) ]

Gene ID: 75471, updated on 2-Nov-2024

Summary

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Official Symbol
1700009N14Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700009N14 geneprovided by MGI
Primary source
MGI:MGI:1922721
See related
Ensembl:ENSMUSG00000028287 AllianceGenome:MGI:1922721
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Enables protein domain specific binding activity. Predicted to be involved in protein import into nucleus and ribosomal subunit export from nucleus. Predicted to be active in cytoplasm and nucleus. Is expressed in brain ventricular layer; orbito-sphenoid; submandibular gland primordium; and vibrissa. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 267.1) See more
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Genomic context

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See 1700009N14Rik in Genome Data Viewer
Location:
4 A5; 4 20.16 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (39450293..39451780)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (39450293..39451780)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_09973 Neighboring gene predicted gene, 53201 Neighboring gene predicted gene 17094 Neighboring gene STARR-seq mESC enhancer starr_09974 Neighboring gene predicted gene, 42271 Neighboring gene STARR-seq mESC enhancer starr_09975 Neighboring gene STARR-seq mESC enhancer starr_09976 Neighboring gene STARR-seq mESC enhancer starr_09977 Neighboring gene STARR-seq mESC enhancer starr_09978 Neighboring gene STARR-seq mESC enhancer starr_09979 Neighboring gene predicted gene, 34007 Neighboring gene ribosomal protein L7A pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Very-KIND, a KIND domain containing RasGEF, controls dendrite growth by linking Ras small GTPases and MAP2. Huang J, et al. J Cell Biol, 2007 Nov 5. PMID 17984326, Free PMC Article
  2. Plasticity in the Glucagon Interactome Reveals Novel Proteins That Regulate Glucagon Secretion in α-TC1-6 Cells. Asadi F, et al. Front Endocrinol (Lausanne), 2018. PMID 30713523, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein domain specific binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ribosomal subunit export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC75471
Names
novel Ras protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081095.1 → NP_001074564.1  uncharacterized protein LOC75471

    See identical proteins and their annotated locations for NP_001074564.1

    Status: PREDICTED

    Source sequence(s)
    AL807385
    Consensus CDS
    CCDS38709.1
    UniProtKB/TrEMBL
    Q14AA6, Q3ULW0
    Related
    ENSMUSP00000029955.5, ENSMUST00000029955.5
    Conserved Domains (2) summary
    cd00877
    Location:11 → 176
    Ran; Ras-related nuclear proteins (Ran)/TC4 family of small GTPases
    PTZ00132
    Location:1 → 216
    PTZ00132; GTP-binding nuclear protein Ran; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    39450293..39451780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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