U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

avl9 AVL9 homolog (S. cerevisiase) [ Danio rerio (zebrafish) ]

Gene ID: 751682, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
avl9provided by ZNC
Official Full Name
AVL9 homolog (S. cerevisiase)provided by ZNC
Primary source
ZFIN:ZDB-GENE-060825-261
See related
Ensembl:ENSDARG00000055538 AllianceGenome:ZFIN:ZDB-GENE-060825-261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153609
Summary
Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See avl9 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (14166038..14211293, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (14127735..14172990, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene bucky ball 2-like Neighboring gene kelch repeat and BTB (POZ) domain containing 2 Neighboring gene uncharacterized LOC110440141 Neighboring gene mitochondrial tRNA translation optimization 1 Neighboring gene uncharacterized LOC110440140

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Multiplicity of Buc copies in Atlantic salmon contrasts with loss of the germ cell determinant in primates, rodents and axolotl. Škugor A, et al. BMC Evol Biol, 2016 Oct 26. PMID 27784263, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC153609

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
late secretory pathway protein AVL9 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045565.2 → NP_001039030.2  late secretory pathway protein AVL9 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    CU652698
    UniProtKB/TrEMBL
    A0A8M1NB59, F1R8S1
    Related
    ENSDARP00000072369.3, ENSDART00000077903.6

  2. NM_001327830.1 → NP_001314759.1  late secretory pathway protein AVL9 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    CU652698
    UniProtKB/TrEMBL
    A0A0R4IRC7, A0A8M1P335
    Related
    ENSDARP00000137083.1, ENSDART00000158399.2
    Conserved Domains (3) summary
    pfam07792
    Location:10 → 72
    Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
    pfam09794
    Location:10 → 493
    Avl9; Transport protein Avl9
    cl11519
    Location:110 → 220
    DENN; DENN (AEX-3) domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    14166038..14211293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools