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4930520O04Rik RIKEN cDNA 4930520O04 gene [ Mus musculus (house mouse) ]

Gene ID: 75116, updated on 8-Feb-2024

Summary

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Official Symbol
4930520O04Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930520O04 geneprovided by MGI
Primary source
MGI:MGI:1922366
See related
Ensembl:ENSMUSG00000074039 AllianceGenome:MGI:1922366
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in testis adult (RPKM 2.8), limb E14.5 (RPKM 1.6) and 27 other tissues See more
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Genomic context

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See 4930520O04Rik in Genome Data Viewer
Location:
9 F3; 9 64.39 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (114197392..114206306)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (114368324..114377238)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930525D18 gene Neighboring gene B cell leukemia/lymphoma 2 related protein A1c Neighboring gene cartilage associated protein Neighboring gene STARR-seq mESC enhancer starr_25345 Neighboring gene STARR-seq mESC enhancer starr_25346 Neighboring gene STARR-positive B cell enhancer ABC_E5109 Neighboring gene transmembrane protein with metallophosphoesterase domain Neighboring gene galactosidase, beta 1 Neighboring gene STARR-positive B cell enhancer mm9_chr9:114327339-114327639 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:114345054-114345237 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:114352487-114352773 Neighboring gene predicted gene, 30254

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040383.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC156499, BF019815
    Related
    ENSMUST00000124664.8

  2. NR_040384.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and includes an alternate exon in the 5' region, compared to variant 1.
    Source sequence(s)
    AC156499, AK015855

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    114197392..114206306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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