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LOC7498012 xyloglucan 6-xylosyltransferase 2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7498012, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7498012
Gene description
xyloglucan 6-xylosyltransferase 2
Locus tag
POPTR_010G025100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7498012 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (3658415..3662178, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (3530943..3534723, complement)

Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7474888 Neighboring gene heat shock factor-binding protein Neighboring gene xyloglucan 6-xylosyltransferase 2 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan 6-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan 6-xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    3658415..3662178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002314412.4 → XP_002314448.2  xyloglucan 6-xylosyltransferase 2

    See identical proteins and their annotated locations for XP_002314448.2

    UniProtKB/TrEMBL
    B9HSB2
    Conserved Domains (1) summary
    PLN03182
    Location:1 → 432
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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Molecular Biology Databases
Research Materials