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LOC7497843 endoglucanase 6 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7497843, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7497843
Gene description
endoglucanase 6
Locus tag
POPTR_003G139600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Also known as
GH9C2
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Genomic context

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See LOC7497843 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 3 NC_037287.2 (15602607..15607564)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 3 NC_037287.1 (15733300..15738261)

Chromosome 3 - NC_037287.2Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF061 Neighboring gene uncharacterized LOC7465315 Neighboring gene long chain acyl-CoA synthetase 4 Neighboring gene RING-H2 finger protein ATL20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 6
Names
endo-1,4-beta-glucanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037287.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    15602607..15607564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002303609.4 → XP_002303645.1  endoglucanase 6

    See identical proteins and their annotated locations for XP_002303645.1

    UniProtKB/TrEMBL
    B9GXH8
    Conserved Domains (1) summary
    PLN02171
    Location:1 → 622
    PLN02171; endoglucanase
Nucleotide Protein
Heading Accession and Version

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