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SH3YL1 SH3 and SYLF domain containing 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 749265, updated on 10-Oct-2024

Summary

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Official Symbol
SH3YL1provided by VGNC
Official Full Name
SH3 and SYLF domain containing 1provided by VGNC
Primary source
VGNC:VGNC:358
Locus tag
CK820_G0050434
See related
Ensembl:ENSPTRG00000011604
Gene type
protein coding
RefSeq status
INFERRED
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SH3YL1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 12 NC_072410.2 (122587367..122633618)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2A NC_072399.1 (219621..265070, complement)

Chromosome 12 - NC_072410.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129141996 Neighboring gene uncharacterized LOC134807850 Neighboring gene ALK and LTK ligand 2 Neighboring gene acid phosphatase 1 Neighboring gene uncharacterized LOC129143202 Neighboring gene family with sequence similarity 110 member C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of ruffle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ruffle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH3 domain-containing YSC84-like protein 1
Names
SH3 domain containing, Ysc84-like 1
SH3 domain containing, Ysc84-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001251864.2 → NP_001238793.1  SH3 domain-containing YSC84-like protein 1

    See identical proteins and their annotated locations for NP_001238793.1

    Status: INFERRED

    Source sequence(s)
    JAQQLN020000012
    UniProtKB/TrEMBL
    A0A2I3RB13, A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8
    Related
    ENSPTRP00000019950.6, ENSPTRT00000021623.6
    Conserved Domains (2) summary
    cd11525
    Location:11 → 209
    SYLF_SH3YL1_like; The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins
    cd11841
    Location:268 → 321
    SH3_SH3YL1_like; Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072410.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    122587367..122633618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063788878.1 → XP_063644948.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  2. XM_063788884.1 → XP_063644954.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  3. XM_063788871.1 → XP_063644941.1  SH3 domain-containing YSC84-like protein 1 isoform X1

  4. XM_063788876.1 → XP_063644946.1  SH3 domain-containing YSC84-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A2I3TSQ3, A0A2J8J670, A0A6D2W695

  5. XM_063788886.1 → XP_063644956.1  SH3 domain-containing YSC84-like protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  6. XM_063788883.1 → XP_063644953.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  7. XM_063788880.1 → XP_063644950.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  8. XM_063788872.1 → XP_063644942.1  SH3 domain-containing YSC84-like protein 1 isoform X1

  9. XM_063788879.1 → XP_063644949.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  10. XM_063788881.1 → XP_063644951.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  11. XM_063788882.1 → XP_063644952.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  12. XM_016944075.3 → XP_016799564.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2I3RB13, A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8
    Conserved Domains (2) summary
    cd11525
    Location:11 → 209
    SYLF_SH3YL1_like; The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins
    cd11841
    Location:268 → 321
    SH3_SH3YL1_like; Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

  13. XM_063788873.1 → XP_063644943.1  SH3 domain-containing YSC84-like protein 1 isoform X1

  14. XM_063788870.1 → XP_063644940.1  SH3 domain-containing YSC84-like protein 1 isoform X1

  15. XM_063788875.1 → XP_063644945.1  SH3 domain-containing YSC84-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A2I3TSQ3, A0A2J8J670, A0A6D2W695

  16. XM_009441871.4 → XP_009440146.3  SH3 domain-containing YSC84-like protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A2I3TSQ3, A0A2J8J670, A0A6D2W695

  17. XM_009441872.5 → XP_009440147.1  SH3 domain-containing YSC84-like protein 1 isoform X5

    See identical proteins and their annotated locations for XP_009440147.1

    UniProtKB/TrEMBL
    A0A2I3RB13, A0A2I3TSQ3, A0A2J8J670, A0A6D2W695
    Conserved Domains (2) summary
    cd11525
    Location:11 → 209
    SYLF_SH3YL1_like; The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins
    cd11841
    Location:287 → 340
    SH3_SH3YL1_like; Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

  18. XM_063788877.1 → XP_063644947.1  SH3 domain-containing YSC84-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  19. XM_063788885.1 → XP_063644955.1  SH3 domain-containing YSC84-like protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  20. XM_054677432.2 → XP_054533407.1  SH3 domain-containing YSC84-like protein 1 isoform X1

  21. XM_063788874.1 → XP_063644944.1  SH3 domain-containing YSC84-like protein 1 isoform X3

  22. XM_054677460.2 → XP_054533435.1  SH3 domain-containing YSC84-like protein 1 isoform X7

  23. XM_054677459.2 → XP_054533434.1  SH3 domain-containing YSC84-like protein 1 isoform X4

  24. XM_054677461.2 → XP_054533436.1  SH3 domain-containing YSC84-like protein 1 isoform X8

  25. XM_054677462.1 → XP_054533437.1  SH3 domain-containing YSC84-like protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

  26. XM_054677433.2 → XP_054533408.1  SH3 domain-containing YSC84-like protein 1 isoform X2

  27. XM_054677463.2 → XP_054533438.1  SH3 domain-containing YSC84-like protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A2J8J650, A0A6D2Y4S6, G2HIF2, H2QHC8

RNA

  1. XR_010149017.1 RNA Sequence

  2. XR_010149018.1 RNA Sequence

  3. XR_008543394.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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