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4930479D17Rik RIKEN cDNA 4930479D17 gene [ Mus musculus (house mouse) ]

Gene ID: 74925, updated on 8-Feb-2024

Summary

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Official Symbol
4930479D17Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930479D17 geneprovided by MGI
Primary source
MGI:MGI:1922175
See related
Ensembl:ENSMUSG00000085238 AllianceGenome:MGI:1922175
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 5.0), cortex adult (RPKM 0.8) and 3 other tissues See more
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Genomic context

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See 4930479D17Rik in Genome Data Viewer
Location:
6 G3; 6 77.7 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (146558716..146566901)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (146657218..146665403)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene transmembrane 7 superfamily member 3 Neighboring gene STARR-positive B cell enhancer ABC_E1076 Neighboring gene mediator complex subunit 21 Neighboring gene predicted pseudogene 6654 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:146623095-146623296 Neighboring gene STARR-positive B cell enhancer ABC_E6504 Neighboring gene STARR-seq mESC enhancer starr_17805 Neighboring gene STARR-positive B cell enhancer ABC_E1332 Neighboring gene serine/threonine kinase 38 like Neighboring gene ribosomal protein S2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046277.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK015591
    Related
    ENSMUST00000146754.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    146558716..146566901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.