U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SH2D5 SH2 domain containing 5 [ Pan troglodytes (chimpanzee) ]

Gene ID: 749040, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SH2D5provided by VGNC
Official Full Name
SH2 domain containing 5provided by VGNC
Primary source
VGNC:VGNC:10996
Locus tag
CK820_G0039367
See related
Ensembl:ENSPTRG00000000295
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SH2D5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (210470153..210483546)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (20815750..20828124, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene U7 small nuclear RNA Neighboring gene heterochromatin protein 1 binding protein 3 Neighboring gene kinesin family member 17 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SH2 domain-containing protein 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    210470153..210483546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063785355.1 → XP_063641425.1  SH2 domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2J8KEU7, A0A8I3B2B4, K7AJ65, K7AWL1

  2. XM_016955490.4 → XP_016810979.2  SH2 domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2J8KEU7, A0A8I3B2B4, K7AJ65, K7AWL1
    Conserved Domains (2) summary
    cd00173
    Location:296 → 372
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:23 → 150
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain

  3. XM_016955484.4 → XP_016810973.2  SH2 domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2J8KEU7, A0A8I3B2B4, K7AJ65, K7AWL1
    Conserved Domains (2) summary
    cd00173
    Location:296 → 372
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:23 → 150
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain

  4. XM_016955500.4 → XP_016810989.2  SH2 domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KET9
    Conserved Domains (2) summary
    cd00173
    Location:212 → 288
    SH2; Src homology 2 (SH2) domain
    cl17171
    Location:1 → 66
    PH-like; Pleckstrin homology-like domain

  5. XM_054680329.2 → XP_054536304.1  SH2 domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2J8KEU7, A0A8I3B2B4, K7AJ65, K7AWL1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.