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LOC7488887 pectinesterase 2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7488887, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7488887
Gene description
pectinesterase 2
Locus tag
POPTR_014G067100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7488887 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (4220622..4223592, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (5466440..5469385, complement)

Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein SAUR36 Neighboring gene plasmodesmata-located protein 8 Neighboring gene methionine aminopeptidase 1A Neighboring gene tubulin-folding cofactor D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    4220622..4223592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002320678.4 → XP_002320714.1  pectinesterase 2

    See identical proteins and their annotated locations for XP_002320714.1

    UniProtKB/TrEMBL
    B9IBX6
    Conserved Domains (2) summary
    pfam01095
    Location:203 → 500
    Pectinesterase; Pectinesterase
    pfam04043
    Location:26 → 167
    PMEI; Plant invertase/pectin methylesterase inhibitor
Nucleotide Protein
Heading Accession and Version

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