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LOC7488611 probable pectate lyase 8 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7488611, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7488611
Gene description
probable pectate lyase 8
Locus tag
POPTR_002G238800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7488611 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (23145967..23151257)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (23181901..23187335)

Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene sterol 3-beta-glucosyltransferase UGT80A2 Neighboring gene protein LATE FLOWERING Neighboring gene uncharacterized LOC7488612 Neighboring gene uncharacterized LOC7462454

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    23145967..23151257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002301730.4 → XP_002301766.2  probable pectate lyase 8

    See identical proteins and their annotated locations for XP_002301766.2

    UniProtKB/TrEMBL
    B9GNG9
    Conserved Domains (1) summary
    smart00656
    Location:168 → 362
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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