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LOC7486998 hydroxyproline O-arabinosyltransferase RDN2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7486998, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7486998
Gene description
hydroxyproline O-arabinosyltransferase RDN2
Locus tag
POPTR_001G028100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7486998 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (2128123..2133499)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (2089957..2095605)

Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 6 Neighboring gene NADPH:quinone oxidoreductase Neighboring gene aspartyl protease AED3 Neighboring gene protein spotted leaf 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase RDN2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    2128123..2133499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024602422.2 → XP_024458190.1  hydroxyproline O-arabinosyltransferase RDN2

    UniProtKB/TrEMBL
    B9GLZ7

  2. XM_024602418.2 → XP_024458186.1  hydroxyproline O-arabinosyltransferase RDN2

    UniProtKB/TrEMBL
    B9GLZ7

  3. XM_002299166.4 → XP_002299202.1  hydroxyproline O-arabinosyltransferase RDN2

    See identical proteins and their annotated locations for XP_002299202.1

    UniProtKB/TrEMBL
    B9GLZ7

  4. XM_024602463.2 → XP_024458231.1  hydroxyproline O-arabinosyltransferase RDN2

    UniProtKB/TrEMBL
    B9GLZ7
Nucleotide Protein
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