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LOC7483648 probable pectate lyase 22 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7483648, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7483648
Gene description
probable pectate lyase 22
Locus tag
POPTR_011G093400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7483648 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 11 NC_037295.2 (12038734..12040646, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 11 NC_037295.1 (11335553..11337680, complement)

Chromosome 11 - NC_037295.2Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM50 Neighboring gene DEK domain-containing chromatin-associated protein 3 Neighboring gene uncharacterized LOC112329150 Neighboring gene fasciclin-like arabinogalactan protein 1 Neighboring gene probable L-type lectin-domain containing receptor kinase S.7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037295.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    12038734..12040646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006377589.3 → XP_006377651.2  probable pectate lyase 22

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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