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LCTL lactase like [ Pan troglodytes (chimpanzee) ]

Gene ID: 748254, updated on 17-Aug-2024

Summary

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Official Symbol
LCTLprovided by VGNC
Official Full Name
lactase likeprovided by VGNC
Primary source
VGNC:VGNC:3538
Locus tag
CK820_G0008244
See related
Ensembl:ENSPTRG00000007197
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See LCTL in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 16 NC_072414.2 (58541679..58560191, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (58516532..58535040, complement)

Chromosome 16 - NC_072414.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD16 Neighboring gene small nucleolar RNA SNORD18 Neighboring gene zwilch kinetochore protein Neighboring gene ribosomal protein L4 Neighboring gene uncharacterized LOC104002348 Neighboring gene SMAD family member 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072414.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    58541679..58560191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009429408.5 → XP_009427683.2  lactase-like protein isoform X1

  2. XM_063795191.1 → XP_063651261.1  lactase-like protein isoform X4

    UniProtKB/TrEMBL
    A0A2J8NR43

  3. XM_063795193.1 → XP_063651263.1  lactase-like protein isoform X5

    UniProtKB/TrEMBL
    A0A2J8NR45, A0A6D2W6L3, H2Q9N6

  4. XM_024349251.3 → XP_024205019.1  lactase-like protein isoform X2

    Conserved Domains (1) summary
    cl23725
    Location:57 → 458
    Glyco_hydro_1; Glycosyl hydrolase family 1

  5. XM_063795192.1 → XP_063651262.1  lactase-like protein isoform X4

    UniProtKB/TrEMBL
    A0A2J8NR43

  6. XM_054667709.2 → XP_054523684.1  lactase-like protein isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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