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LOC7481498 alpha-glucan phosphorylase, H isozyme [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7481498, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7481498
Gene description
alpha-glucan phosphorylase, H isozyme
Locus tag
POPTR_009G041800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7481498 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (4900794..4908588, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (4872969..4880993, complement)

Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 49 Neighboring gene serine/arginine-rich splicing factor SR45a Neighboring gene calmodulin-binding receptor-like cytoplasmic kinase 1 Neighboring gene probable anion transporter 4, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-glucan phosphorylase, H isozyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    4900794..4908588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002313363.4 → XP_002313399.1  alpha-glucan phosphorylase, H isozyme

    See identical proteins and their annotated locations for XP_002313399.1

    UniProtKB/TrEMBL
    B9HP81
    Conserved Domains (1) summary
    cd04300
    Location:43 → 847
    GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials