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LOC7477987 exopolygalacturonase [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7477987, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7477987
Gene description
exopolygalacturonase
Locus tag
POPTR_007G035800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7477987 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 7 NC_037291.2 (2798450..2799905)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 7 NC_037291.1 (2763669..2765124)

Chromosome 7 - NC_037291.2Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L10a-2 Neighboring gene B3 domain-containing protein At4g01580 Neighboring gene uncharacterized LOC7473115 Neighboring gene uncharacterized LOC7484108

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037291.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    2798450..2799905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002310729.1 → XP_002310765.1  exopolygalacturonase

    See identical proteins and their annotated locations for XP_002310765.1

    UniProtKB/TrEMBL
    B9HEF4
    Conserved Domains (1) summary
    cl19188
    Location:7 → 391
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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