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TAF1A TATA-box binding protein associated factor, RNA polymerase I subunit A [ Pan troglodytes (chimpanzee) ]

Gene ID: 747636, updated on 10-Oct-2024

Summary

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Official Symbol
TAF1Aprovided by VGNC
Official Full Name
TATA-box binding protein associated factor, RNA polymerase I subunit Aprovided by VGNC
Primary source
VGNC:VGNC:8516
Locus tag
CK820_G0040426
See related
Ensembl:ENSPTRG00000002007
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TAF1A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (26492046..26527411)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (204795232..204830998, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene axin interactor, dorsalization associated Neighboring gene keratinocyte-associated transmembrane protein 2-like Neighboring gene MIA SH3 domain ER export factor 3 Neighboring gene uncharacterized LOC104004743 Neighboring gene HHIP like 2 Neighboring gene uncharacterized LOC129138174

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA box-binding protein-associated factor RNA polymerase I subunit A
Names
TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa
TBP-associated factor 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    26492046..26527411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063809979.1 → XP_063666049.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1

    UniProtKB/TrEMBL
    A0A2J8K999, A0A6D2WUX7, H2Q165

  2. XM_003308755.6 → XP_003308803.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1

    See identical proteins and their annotated locations for XP_003308803.1

    UniProtKB/TrEMBL
    A0A2J8K925, A0A2J8K999, A0A6D2WUX7, H2Q165
    Related
    ENSPTRP00000003364.3
    Conserved Domains (1) summary
    pfam14929
    Location:63 → 423
    TAF1_subA; TAF RNA Polymerase I subunit A

  3. XM_063809991.1 → XP_063666061.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X3

    UniProtKB/TrEMBL
    A0A2J8K923

  4. XM_009441525.5 → XP_009439800.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X2

    UniProtKB/TrEMBL
    A0A2J8K925
    Conserved Domains (1) summary
    pfam14929
    Location:8 → 405
    TAF1_subA; TAF RNA Polymerase I subunit A

  5. XM_063809988.1 → XP_063666058.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X3

    UniProtKB/TrEMBL
    A0A2J8K923

  6. XM_063809986.1 → XP_063666056.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X3

    UniProtKB/TrEMBL
    A0A2J8K923

  7. XM_009441528.4 → XP_009439803.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X3

    See identical proteins and their annotated locations for XP_009439803.1

    UniProtKB/TrEMBL
    A0A2J8K923
    Conserved Domains (1) summary
    pfam14929
    Location:1 → 309
    TAF1_subA; TAF RNA Polymerase I subunit A

  8. XM_063809992.1 → XP_063666062.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X3

    UniProtKB/TrEMBL
    A0A2J8K923
Nucleotide Protein
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