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LOC7470015 chromatin remodeling protein SHL [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7470015, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7470015
Gene description
chromatin remodeling protein SHL
Locus tag
POPTR_004G159900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7470015 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (18007431..18010754)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (18076556..18079880)

Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7461239 Neighboring gene beta-galactosidase 3 Neighboring gene uncharacterized LOC7470016 Neighboring gene purple acid phosphatase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromatin remodeling protein SHL

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    18007431..18010754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002305414.4 → XP_002305450.1  chromatin remodeling protein SHL isoform X1

    See identical proteins and their annotated locations for XP_002305450.1

    UniProtKB/TrEMBL
    B9H0V2
    Conserved Domains (2) summary
    cl02608
    Location:22 → 157
    BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    cl22851
    Location:141 → 187
    PHD_SF; PHD finger superfamily

  2. XM_024599698.2 → XP_024455466.1  chromatin remodeling protein SHL isoform X2

    UniProtKB/TrEMBL
    A0A2K2AVE7
    Conserved Domains (2) summary
    cl02608
    Location:22 → 157
    BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    cl22851
    Location:141 → 187
    PHD_SF; PHD finger superfamily

  3. XM_024599700.2 → XP_024455468.1  chromatin remodeling protein SHL isoform X3

    UniProtKB/TrEMBL
    U7DV17
    Conserved Domains (1) summary
    cl02608
    Location:22 → 157
    BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

RNA

  1. XR_002981441.2 RNA Sequence

  2. XR_002981442.2 RNA Sequence

  3. XR_008058988.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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