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LOC7466286 probable xyloglucan endotransglucosylase/hydrolase protein 5 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7466286, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7466286
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 5
Locus tag
POPTR_014G140300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7466286 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (9526916..9528890)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (10687207..10689166)

Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 41 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 Neighboring gene tyrosine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    9526916..9528890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002320365.4 → XP_002320401.1  probable xyloglucan endotransglucosylase/hydrolase protein 5

    See identical proteins and their annotated locations for XP_002320401.1

    UniProtKB/TrEMBL
    B9IA32
    Conserved Domains (1) summary
    cd02176
    Location:29 → 287
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version

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