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LOC7465995 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7465995, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7465995
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
Locus tag
POPTR_006G175500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7465995 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (18074729..18078341, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (18798572..18802231, complement)

Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene preprotein translocase subunit SCY1, chloroplastic Neighboring gene cyclic nucleotide-gated ion channel 17-like Neighboring gene uncharacterized LOC18100556 Neighboring gene RING-H2 finger protein ATL56-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    18074729..18078341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002308402.4 → XP_002308438.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

    See identical proteins and their annotated locations for XP_002308438.1

    UniProtKB/TrEMBL
    B9HBP3
    Conserved Domains (1) summary
    cl28137
    Location:1 → 840
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
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