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LOC7464588 polygalacturonase [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7464588, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7464588
Gene description
polygalacturonase
Locus tag
POPTR_010G177501v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7464588 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (17724494..17728432)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) Unplaced Scaffold NW_020168276.1 (8471..12676, complement)

Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene endoglucanase 12 Neighboring gene type II inositol polyphosphate 5-phosphatase 15 Neighboring gene polygalacturonase Neighboring gene 2-alkenal reductase (NADP(+)-dependent)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    17724494..17728432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024593503.2 → XP_024449271.1  polygalacturonase

    UniProtKB/TrEMBL
    A0A2K1YVX3, B9HYF5
    Conserved Domains (1) summary
    cl19188
    Location:11 → 397
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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