U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PSD pleckstrin and Sec7 domain containing [ Pan troglodytes (chimpanzee) ]

Gene ID: 746294, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
PSDprovided by VGNC
Official Full Name
pleckstrin and Sec7 domain containingprovided by VGNC
Primary source
VGNC:VGNC:12440
Locus tag
CK820_G0004077
See related
Ensembl:ENSPTRG00000002889
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PSD in Genome Data Viewer
Location:
chromosome: 8
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 8 NC_072406.2 (114506128..114523803, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 10 NC_072408.1 (105120053..105137610, complement)

Chromosome 8 - NC_072406.2Genomic Context describing neighboring genes Neighboring gene golgi brefeldin A resistant guanine nucleotide exchange factor 1 Neighboring gene uncharacterized LOC107966821 Neighboring gene nuclear factor kappa B subunit 2 Neighboring gene F-box and leucine rich repeat protein 15 Neighboring gene CUE domain containing 2 Neighboring gene microRNA mir-146b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PH and SEC7 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072406.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    114506128..114523803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063781122.1 → XP_063637192.1  PH and SEC7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8PCZ7, A0A6D2WHU3, H2R3A5

  2. XM_063781123.1 → XP_063637193.1  PH and SEC7 domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8PD02

  3. XM_016919220.3 → XP_016774709.1  PH and SEC7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8PCZ7, A0A6D2WHU3, H2R3A5
    Conserved Domains (3) summary
    cd00171
    Location:542 → 708
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:753 → 877
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain
    cl26464
    Location:17 → 181
    Atrophin-1; Atrophin-1 family

  4. XM_016919216.3 → XP_016774705.1  PH and SEC7 domain-containing protein 1 isoform X1

  5. XM_016919217.3 → XP_016774706.1  PH and SEC7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8PCZ7, A0A6D2WHU3, H2R3A5
    Related
    ENSPTRP00000045188.4
    Conserved Domains (3) summary
    cd00171
    Location:542 → 708
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:753 → 877
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain
    cl26464
    Location:17 → 181
    Atrophin-1; Atrophin-1 family

  6. XM_016919218.4 → XP_016774707.1  PH and SEC7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8PCZ7, A0A6D2WHU3, H2R3A5
    Conserved Domains (3) summary
    cd00171
    Location:542 → 708
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:753 → 877
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain
    cl26464
    Location:17 → 181
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_008537608.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.