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LOC7460494 pto-interacting protein 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7460494, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7460494
Gene description
pto-interacting protein 1
Locus tag
POPTR_002G188600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7460494 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (15048441..15052400, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (14827465..14831427, complement)

Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7481437 Neighboring gene U2 spliceosomal RNA Neighboring gene squamosa promoter-binding-like protein 1 Neighboring gene aspartic proteinase CDR1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pto-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    15048441..15052400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024596218.2 → XP_024451986.1  pto-interacting protein 1

    UniProtKB/TrEMBL
    A9PDH0, B9GSZ7
    Conserved Domains (1) summary
    cd14066
    Location:75 → 348
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  2. XM_024596217.2 → XP_024451985.1  pto-interacting protein 1

    UniProtKB/TrEMBL
    A9PDH0, B9GSZ7
    Conserved Domains (1) summary
    cd14066
    Location:75 → 348
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  3. XM_002301509.4 → XP_002301545.2  pto-interacting protein 1

    See identical proteins and their annotated locations for XP_002301545.2

    UniProtKB/TrEMBL
    A9PDH0, B9GSZ7
    Conserved Domains (1) summary
    cd14066
    Location:75 → 348
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
Nucleotide Protein
Heading Accession and Version

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