U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CTL1 carnitine/acylcarnitine translocase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449565, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
CTL1
Gene description
carnitine/acylcarnitine translocase
Locus tag
THAPSDRAFT_3790
Gene type
protein coding
RNA name
carnitine/acylcarnitine translocase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CTL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_012066.1 (1805550..1806665)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ubiquinol-cytochrome-c reductase-like protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
carnitine/acylcarnitine translocase
XP_002288506.1
  • FUNCTION TRANSPORT OF CARNITINE OR ACYLCARNITINE FROM THE CYTOSOL TO THE MITOCHONDRIAL MATRIX (BY SIMILARITY). SUBCELLULAR LOCATION INTEGRAL MEMBRANE PROTEIN. MITOCHONDRIAL INNER MEMBRANE (BY SIMILARITY). DOMAIN COMPOSED OF THREE HOMOLOGOUS DOMAINS. BELONGS TO THE MITOCHONDRIAL CARRIER FAMILY

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    1805550..1806665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288470.1 → XP_002288506.1  carnitine/acylcarnitine translocase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288506.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BYS8
    Conserved Domains (1) summary
    pfam00153
    Location:257 → 337
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials