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Cfap20dc CFAP20 domain containing [ Mus musculus (house mouse) ]

Gene ID: 74430, updated on 17-Aug-2024

Summary

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Official Symbol
Cfap20dcprovided by MGI
Official Full Name
CFAP20 domain containingprovided by MGI
Primary source
MGI:MGI:1926154
See related
Ensembl:ENSMUSG00000021747 AllianceGenome:MGI:1926154
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930452B06Rik; 4933406L09Rik
Summary
Is expressed in olfactory epithelium. Orthologous to human CFAP20DC (CFAP20 domain containing). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 3.8), bladder adult (RPKM 1.6) and 21 other tissues See more
Orthologs
human all
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Genomic context

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See Cfap20dc in Genome Data Viewer
Location:
14 A1; 14 4.87 cM
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (13803434..14038602)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (8431171..8666336, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35877 Neighboring gene RIKEN cDNA 4930455B14 gene Neighboring gene predicted gene, 20241 Neighboring gene STARR-seq mESC enhancer starr_35874 Neighboring gene STARR-seq mESC enhancer starr_35873 Neighboring gene STARR-seq mESC enhancer starr_35872 Neighboring gene predicted gene, 46492 Neighboring gene STARR-seq mESC enhancer starr_35871 Neighboring gene predicted gene, 41095 Neighboring gene STARR-seq mESC enhancer starr_35870 Neighboring gene STARR-seq mESC enhancer starr_35869 Neighboring gene cyclin B1 pseudogene Neighboring gene RIKEN cDNA 2610318M16 gene Neighboring gene FAM3 metabolism regulating signaling molecule D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome-wide CRISPR Screen to Identify Genes that Suppress Transformation in the Presence of Endogenous Kras(G12D). Huang J, et al. Sci Rep, 2019 Nov 20. PMID 31748650, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein CFAP20DC
Names
uncharacterized protein C3orf67 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028934.3 → NP_083210.3  protein CFAP20DC

    See identical proteins and their annotated locations for NP_083210.3

    Status: VALIDATED

    Source sequence(s)
    AK019627, AK047451, AK133893, AV127568, AV327822
    Consensus CDS
    CCDS26814.1
    UniProtKB/Swiss-Prot
    E9QK14, Q6P2K3
    Related
    ENSMUSP00000100061.4, ENSMUST00000102996.4
    Conserved Domains (1) summary
    pfam05018
    Location:6 → 171
    DUF667; Protein of unknown function (DUF667)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    13803434..14038602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518106.5 → XP_006518169.1  protein CFAP20DC isoform X2

    See identical proteins and their annotated locations for XP_006518169.1

    Conserved Domains (1) summary
    pfam05018
    Location:7 → 63
    DUF667; Protein of unknown function (DUF667)

  2. XM_011244772.4 → XP_011243074.1  protein CFAP20DC isoform X1

    Conserved Domains (2) summary
    pfam05018
    Location:1 → 188
    DUF667; Protein of unknown function (DUF667)
    pfam15324
    Location:302 → 433
    TALPID3; Hedgehog signalling target

  3. XM_030248080.2 → XP_030103940.1  protein CFAP20DC isoform X4

    Conserved Domains (1) summary
    pfam05018
    Location:1 → 171
    DUF667; Protein of unknown function (DUF667)

  4. XM_006518107.2 → XP_006518170.1  protein CFAP20DC isoform X2

    See identical proteins and their annotated locations for XP_006518170.1

    Conserved Domains (1) summary
    pfam05018
    Location:7 → 63
    DUF667; Protein of unknown function (DUF667)

  5. XM_011244773.4 → XP_011243075.1  protein CFAP20DC isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6P2K3.2 GenPept UniProtKB/Swiss-Prot:Q6P2K3

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